Changelog¶
Name |
PR |
Developer |
Date |
Version |
|---|---|---|---|---|
🎨 Single bionty repo |
2024-07-30 |
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📝 Rename Artifact.backed to Artifact.open |
2024-07-21 |
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🚚 Rename |
2024-07-20 |
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📝 Use Artifact.backed to connect to tiledbsoma |
2024-07-19 |
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📝 Add pip install for use cases |
2024-06-26 |
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📝 Add tiledbsoma scrna guide |
2024-06-25 |
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♻️ Replace |
2024-05-29 |
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♻️ Fixes and prettifiation for 0.72 |
2024-05-20 |
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:pencil2: Fix standardization DF for entity notebooks |
2024-05-08 |
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💚 Fix add_feature_set |
2024-05-07 |
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✨ Add celltypist back |
2024-05-01 |
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Add SPARQL demonstration |
2024-04-24 |
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♻️ Refactor analysis flow |
2024-04-23 |
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♻️ Use notebooks for project-flow |
2024-04-23 |
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👷 Use uv |
2024-04-22 |
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✏️ Fix query |
2024-04-18 |
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♻️ Simplify multimodal |
2024-04-10 |
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✨ Update multimodal |
2024-04-10 |
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⬆️ Update Annotate |
2024-03-31 |
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🚚 Move the curate nb to lamindb |
2024-03-28 |
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🚚 Rename Validate to Annotate |
2024-03-28 |
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🎨 Use validator for scrna |
2024-03-26 |
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✨ Add validator guide here |
2024-03-18 |
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💚 Update docs |
2024-03-01 |
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Simplify text & add analysis-registries back to CI |
2024-02-17 |
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Remove cell typist mention in analysis-registries |
2024-02-17 |
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Remove warning in enrichr |
2024-02-17 |
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💚 Fix CI |
2024-02-06 |
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🔥 Remove setup for public ontologies |
2024-02-05 |
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📝 Import bionty instead of lb |
2024-01-31 |
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Automate entity notebook generation with nox |
2024-01-24 |
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Entity generation script |
2024-01-18 |
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📝 Fix more bionty renaming |
2024-01-12 |
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💚 Fix |
2024-01-10 |
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Fix typos in scrna5 |
2024-01-08 |
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🎨 Not set organism globally |
2024-01-08 |
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📝 Show virtual outer join in mapped |
2024-01-07 |
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♻️ Iterate scrna guide |
2024-01-03 |
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💚 Fix |
2024-01-02 |
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🚚 Rename |
2023-12-24 |
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Use public-ontologies text |
2023-12-22 |
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Add single ontology notebooks |
2023-12-22 |
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🚚 Rename File to Artifact |
2023-12-12 |
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📝 Show virtual inner join in mapped |
2023-12-05 |
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📝 Added celltypist and pathway analyses |
2023-12-04 |
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✨ Enabled ID conversion via return_field |
2023-12-02 |
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♻️ Simplify scrna5 |
2023-11-20 |
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📝 Show an example of ln.Dataset.indexed usage |
2023-11-20 |
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📝 Refactor project-flow |
2023-11-15 |
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📝 Simplify scrna guide |
2023-11-07 |
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♻️ Refactored analysis-flow |
2023-10-27 |
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💄 Polish |
2023-10-23 |
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💚 Try to fix CI |
2023-10-16 |
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📝 Use scvi in the scrna notebook |
2023-10-10 |
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🍱 Saved scrna notebooks to lamindata |
2023-10-04 |
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💄 Polish facs |
2023-10-02 |
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📝 Polish scrna guide |
2023-10-02 |
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📝 Add VAE notebook for scrnaseq |
2023-10-02 |
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♻️ Refactor scRNA guide |
2023-09-29 |
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📝 Build up versioned FACS dataset incrementally |
2023-09-27 |
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📝 Shard dataset in FACS |
2023-09-26 |
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📝 Slightly polish FACS |
2023-09-23 |
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📝 Break out FACS into 3 notebooks |
2023-09-22 |
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Add notebook badges |
2023-09-06 |
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📝 Improve FACS example |
2023-09-06 |
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📝 Simplify CellTypist |
2023-09-05 |
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Add binder env |
2023-09-04 |
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♻️ Upgrade to latest lamindb |
2023-08-31 |
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📝 Rename flow to facs, removed modality assignment |
2023-08-31 |
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📝 Polish flow & scrna |
2023-08-31 |
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📝 Cleaned cell type and pathway notebooks |
2023-08-30 |
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🚚 Rename data lineage to data flow |
2023-08-29 |
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♻️ Refactor project flow |
2023-08-29 |
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🚚 Rename data lineage to data flow |
2023-08-29 |
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multimodal review |
2023-08-28 |
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📝 Further improve scrna |
2023-08-28 |
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Integrate scRNA-seq review |
2023-08-28 |
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Bulk review |
2023-08-28 |
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Address flow cytomery review |
2023-08-28 |
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🔥 Removed mouse dataset from scrna use cases |
2023-08-28 |
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Address LH birds eye review |
2023-08-27 |
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📝 Enable default_field for inspect and validate |
2023-08-22 |
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📝 Updated data type notebooks |
2023-08-18 |
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📝 Re-structure scrna with 3 step process |
2023-08-17 |
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📝 Improve readme |
2023-08-17 |
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♻️ Refactor birds-eye |
2023-08-16 |
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♻️ Refactor CI |
2023-08-12 |
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🍱 Add data-lineage use cases |
2023-08-11 |
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🚚 Move notebooks to root level for prettier persistent URLs |
2023-08-10 |
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🚚 Rename folders according to consistent scheme |
2023-08-10 |
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📝 Fix index |
2023-08-09 |
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Update |
2023-08-08 |
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♻️ Polish data type guides |
2023-08-07 |
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📝 Save to validate |
2023-08-06 |
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🍱 Add bulk RNA notebook |
2023-08-06 |
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🚚 Move |
2023-08-06 |
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♻️ Refactor multimodal and spatial |
2023-08-05 |
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♻️ Also refactor cellmarker guide to pre-storage curation |
2023-08-05 |
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🎨 Store validated data in scrna example |
2023-08-05 |
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🚚 Move biology notebooks from lamindb here |
2023-08-05 |
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📝 Updated index |
2023-08-04 |
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📝 Updated all use cases with new API |
2023-08-03 |
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🚚 Rename repository to |
2023-07-20 |
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⬆️ Removed top_hit param |
2023-07-20 |
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⬆️ Remove sklearn pinning |
2023-07-11 |
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📝 Improve celltypist |
2023-07-04 |
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📝 Updated Celltypist example with parents tracking |
2023-07-03 |
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👷 Send Slack notif |
2023-06-30 |
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📝 Try to fix build |
2023-06-20 |
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Overhaul pathways and lineage |
2023-06-14 |
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✨ Added a lineage tracking example |
2023-06-05 |
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🎨 Adapted to the django based APIs |
2023-06-05 |
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Improve text of cell typist use-case |
2023-06-02 |
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📝 Added notebook tracking to enrichr example |
2023-06-02 |
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✨ Added a pathway use case |
2023-06-02 |
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✨ Add a Celltypist use case |
2023-05-29 |